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• "Hydrodynamic origins of symmetric swimming strategies," T Kanazawa, K Ishimoto, K Kawaguchi, arXiv (2026)
• "Coding sequence clustering universally predicts fine- and coarse-scale chromatin compartment landscapes," R T Cerbus, K Kawaguchi, I Hiratani, bioRxiv (2026)
• "Hermitian and Non-Hermitian Topology in Active Matter," K Sone, K Yokomizo, K Kawaguchi, Y Ashida, Rep Prog Phys (2026) [arxiv]
• "Gene-scale in vitro reconstitution reveals histone acetylation directly controls chromatin architecture," Y T Fukai, T Kujirai, M Wakamori, S Kanamura, L Yamauchi, S Zeraati, S Morita C Tanegashima, M Kadota, M Shirouzu, H Kurumizaka, T Umehara, K Kawaguchi, Sci Adv (2025)
• "Sequence grammar and dynamics of subcellular translation revealed by APEX-Ribo-Seq," Kotaro Tomuro, Takanori Akaiwa, Akane Harada, Kenta Kobayashi, Nobuyuki Shiina, Kyogo Kawaguchi, Yuichi Shichino, Shintaro Iwasaki, bioRxiv (2025)
• "Integer topological defects offer a methodology to quantify and classify active cell monolayers," Z Zhao, H Li, Y Yao, Y Zhao, F Serra, K Kawaguchi, H Zhang, Masaki Sano, Nat Commun (2025)
• "Universality in the dynamical phase transitions of Brownian motion," T Kanazawa, K Kawaguchi, K Adachi, Phys Rev Research (2025) [arxiv]
• "Homeotic and Non-Homeotic Patterns in the Tetrapod Vertebral Formula," R T Cerbus, I Hiratani, K Kawaguchi, PNAS (2024) (Github) [biorxiv]
• "A Percolation Model of Emergence: Analyzing Transformers Trained on a Formal Language," E S Lubana, K Kawaguchi, R P Dick, H Tanaka, arXiv (2024) [accepted at ICLR 2025]
• "Predicting Heteropolymer Interactions: Demixing and Hypermixing of Disordered Protein Sequences," K Adachi, K Kawaguchi, Phys Rev X (2024) (Github) [arxiv]
"Power-Law Correlation in the Homogeneous Disordered State of Anisotropically Self-Propelled Systems," K Adachi, H Nakano, arXiv (2024)
"Activity-Induced Ferromagnetism in One-Dimensional Quantum Many-Body Systems," K Takasan, K Adachi, K Kawaguchi, Phys Rev Research (2024)
"Experimental Identification of Force, Velocity, and Nematic Order Relationships in Active Nematic Cell Monolayers," M Uwamichi, H Li, Z Zhao, Y Yao, H Higuchi, K Kawaguchi, M Sano, arXiv (2024)
"Universal Properties of Repulsive Self-Propelled Particles and Attractive Driven Particles," H Nakano, K Adachi, Phys Rev Research (2024)
"Vortex Dynamics in the Two-Dimensional BCS-BEC Crossover," M Heyl, K Adachi, Y M Itahashi, Y Nakagawa et al., Nat Commun (2022)
"LapTrack: Linear assignment particle tracking with tunable metrics," Y Fukai, K Kawaguchi, Bioinformatics (2022)
"Gradual differentiation uncoupled from cell cycle exit generates heterogeneity in the epidermal stem cell layer," K Cockburn,..., K Kawaguchi,..., V Greco, Nat Cell Biol (2022)
"Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks," T Yamamoto, K Cockburn, V Greco, K Kawaguchi, PLOS Comp Biol (2022) (Github)
"Universal constraint on nonlinear population dynamics," K Adachi, R Iritani, R Hamazaki, Comm Phys (2022)
"Activity-induced phase transition in a quantum many-body system," K Adachi, K Takasan, K Kawaguchi, Phys Rev R (2022)
"Tracing the origin of hair follicle stem cells," R Morita,..., T Yamamoto,..., Nature (2021)
"Cell cycle–dependent active stress drives epithelia remodeling," J Devany, D M Sussman, T Yamamoto, M L Manning, M L Gardel, PNAS (2021)
"Universality of active and passive phase separation in a lattice model," K Adachi, K Kawaguchi, arXiv (2020)
"Collective cell migration of epithelial cells driven by chiral torque generation," T Yamamoto, T Hiraiwa, T Shibata, Phys Rev Research (2020)
"Adherens junction serves to generate cryptic lamellipodia required for collective migration of epithelial cells," M Ozawa, S Hiver, T Yamamoto et al., J Cell Biol (2020) [biorxiv]
"Non-monotonic fluidization generated by fluctuating edge tensions in confluent tissues," T Yamamoto, D M Sussman, T Shibata, M L Manning, arXiv (2020)
"Chirality-driven edge flow and non-Hermitian topology in active nematic cells," L Yamauchi, T Hayata, M Uwamichi, T Ozawa, K Kawaguchi, arXiv (2020)
"Direct evidence for universal statistics of stationary Kardar-Parisi-Zhang interfaces," T Iwatsuka, Y T Fukai, K A Takeuchi, Phys Rev Lett (2020) [arxiv]
"Surface wetting by kinetic control of liquid-liquid phase separation," K Adachi, K Kawaguchi, arXiv (2020)
"Kardar-Parisi-Zhang Interfaces with Curved Initial Shapes and Variational Formula," Y T Fukai, K A Takeuchi, Phys Rev Lett (2020)
"Reorientation behavior in the helical motility of light-responsive spiral droplets," F Lancia, T Yamamoto et al., Nat Commun (2019)
"Chromatin state switching in a polymer model with mark-conformation coupling," K Adachi, K Kawaguchi, Phys Rev E (2019) [arxiv]
"A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage," A Sharir,..., K Kawaguchi et al., Nat Cell Biol (2019)
"Universal voter model emergence in genetically labeled homeostatic tissues," H Yamaguchi, K Kawaguchi, arXiv (2019)
"Homeostatic epidermal stem cell self-renewal is driven by local differentiation," KR Mesa, K Kawaguchi, K Cockburn et al., Cell Stem Cell (2018) [Japanese]